HsaEX6004785 @ hg19
Exon Skipping
Gene
ENSG00000166736 | HTR3A
Description
5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:5297]
Coordinates
chr11:113845603-113849999:+
Coord C1 exon
chr11:113845603-113846114
Coord A exon
chr11:113848493-113848644
Coord C2 exon
chr11:113849955-113849999
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGAACTGTTCTCCTTCCCAGCCA
3' ss Score
7.73
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
AGGGACATCAATGAAAGCAGCAGCGTGGTGCACCTCCCAGGGGTCAGGCTGCACCCTTGTCTCATGGGCTTCTGCAGCCCCTGTCCCCACCTAAGTTACTCCTTGGGGAAACATGGCCAAGCCCCCTGGCTGAATGGGTGGACTGAGCTCCCACAGCATGACATCAGCTAGGGCGGGCTCCCCTCTCAGCTGTCCCCTCCCCTTTCCTCCCGCCTGAAACATGATCCAGCTGAAGGACTGATTGCAGGAAAACTTGGCAGCTCCCCAACCTTGGTGGCCCAGGGAGTGTGAGGCTGCAGCCTCAGAAGGTGTGAGCAGTGGCCACGAGAGGCAGGCTGGCTGGGACATGAGGTTGGCAGAGGGCAGGCAAGCTGGCCCTTGGTGGGCCTCGTCCTGAGCACTCGGAGGCACTCCTATGCTTGGAAAGCTCGCTATGCTGCTGTGGGTCCAGCAGGCGCTGCTCGCCTTGCTCCTCCCCACACTCCTGGCACAGGGAGAAG
Seq A exon
CCAGGAGGAGCCGAAACACCACCAGGCCCGCTCTGCTGAGGCTGTCGGATTACCTTTTGACCAACTACAGGAAGGGTGTGCGCCCCGTGAGGGACTGGAGGAAGCCAACCACCGTATCCATTGACGTCATTGTCTATGCCATCCTCAACGTG
Seq C2 exon
GATGAGAAGAATCAGGTGCTGACCACCTACATCTGGTACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166736-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.7=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAAGGTGTGAGCAGTGG
R:
CTGCCGGTACCAGATGTAGGT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)