RnoEX6035631 @ rn6
Exon Skipping
Gene
ENSRNOG00000006595 | Htr3a
Description
5-hydroxytryptamine receptor 3A [Source:RGD Symbol;Acc:61818]
Coordinates
chr8:53220057-53223804:-
Coord C1 exon
chr8:53223629-53223804
Coord A exon
chr8:53221268-53221434
Coord C2 exon
chr8:53220057-53220101
Length
167 bp
Sequences
Splice sites
3' ss Seq
TAAAGTGCTCTCCATTCCAGGCA
3' ss Score
7.91
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAGCAGCCTGCCTGGGACATGAGGTTGGCAGCGGGTGTGCAGGCTGGCAGTCTGGGGGACTCATCCTGAGTGGCTGCTCCGAGGCCCTCCCACATCCGGGAAGCTTGCCATGCCGCTCTGCATCCCGCAGGTGCTGTTGGCCTTGTTCCTTTCCGTGCTGATAGCCCAGGGAGAAG
Seq A exon
GCAGCCGGAGGAGGGCCACCCAGGCCCACAGCACCACCCAGCCTGCTCTGCTGAGGCTGTCAGATCACCTCCTGGCTAACTACAAGAAGGGGGTGCGGCCTGTGCGGGACTGGAGGAAGCCCACCCTGGTCTCCATCGATGTCATCATGTATGCCATCCTCAACGTG
Seq C2 exon
GATGAGAAGAACCAGGTTCTGACAACCTACATATGGTACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006595-'0-2,'0-0,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.7=69.6)
C2:
PF0293118=Neur_chan_LBD=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGCCTGGGACATGAG
R:
CTGCCGGTACCATATGTAGGT
Band lengths:
218-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]