BtaEX6058761 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32741839-32746925:+
Coord C1 exon
chr15:32741839-32742013
Coord A exon
chr15:32743020-32743126
Coord C2 exon
chr15:32746733-32746925
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTTCATCTTTCATTTTCAGTTT
3' ss Score
10.77
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTATATGCAATTGCAGTTAAAGATCTAATAAGAAAGAGTGAGAGGAGCTACAAGGTGAAATCCCGCAACAGTACCGTGGAATACACGCTGAACAAGTTGGAGCCTGGAGGGAAATATCACATCATTGTCCAGCTGGGGAACATGAGCAAAGACTCCAGTATCAAAATTACCACGG
Seq A exon
TTTCATTATTAGCACCTGATGCCTTAAAAATCATCACAGAAAATGACCACGTCCTTCTGTTTTGGAAAAGCCTAGCTTTGAAAGAAAAGTATTTTAATGAAAGCAGG
Seq C2 exon
GGCTACGAGATACACATGTTTGATAGTGTCATGAATATCTCAGCTTACCTTGGGAATACTACGGACAATTTCTTTAAAATTTCCAACCTGAAACTGGGTCATAATTATACTTTCACTGTCCAAGCACGATGTCTTTTCGGCAGCCAGATCTGTGGGGAGCCTGCAGTCCTGCTTTATGATGAGTTGGGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'74-60,'74-59,75-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.0=84.7)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCCCGCAACAGTACCGT
R:
AGACATCGTGCTTGGACAGTG
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]