MmuEX6065168 @ mm9
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41782020-41785693:-
Coord C1 exon
chr9:41785519-41785693
Coord A exon
chr9:41784441-41784547
Coord C2 exon
chr9:41782020-41782212
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTTAATCTTGCACTCTCAGTTT
3' ss Score
5.22
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTCTACGCCATTGCAGTGAAAGATCTGATCAGGAAGACGGACAGAAGCTACAAAGTCAGATCCCGCAACAGTACTGTGGAGTACAGCCTAAGCAAGCTGGAACCTGGAGGGAAATACCACATCATTGTCCAGCTGGGAAACATGAGCAAGGATTCCAGCATAAAAATCACCACAG
Seq A exon
TTTCGTTATCAGCACCTGATGCCTTAAAAATCATAACGGAAAACGACCACGTTCTCCTCTTTTGGAAAAGCCTAGCACTGAAGGAAAAGCAGTTCAATGAAACCAGG
Seq C2 exon
GGCTATGAGATCCACATGTCTGACAGCGCTGTGAATCTCACCGCTTACCTCGGGAATACTACGGACAATTTCTTTAAAGTGTCCAACCTGAAGATGGGTCATAACTACACTTTCACGGTCCAAGCGCGGTGTCTCTTTGGTAGCCAGATCTGTGGGGAGCCCGCCGTGCTGCTGTACGATGAACTGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'53-50,'53-48,54-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.0=84.7)
A:
PF0004116=fn3=PU(41.0=88.9)
C2:
PF0004116=fn3=PD(56.4=67.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCGCAACAGTACTGTGG
R:
CGCTTGGACCGTGAAAGTGTA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: