DreEX0074517 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21610116-21612736:-
Coord C1 exon
chr15:21612562-21612736
Coord A exon
chr15:21610655-21610761
Coord C2 exon
chr15:21610116-21610314
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCCTATATTTACCCACACAGTTC
3' ss Score
6.25
5' ss Seq
AGGGTTAGA
5' ss Score
1.78
Exon sequences
Seq C1 exon
ACATATGCTGTGCATGTGAGAGATACAGTTCGAAAAACCGAGAGCGACTATAAAGTGATCACTCAGAATAACACAGTGGAGTACACACTGAAGGGCCTGGAGCCGGCCGGACGCTACAGCATCACCATCAGACTGCTCAACATGAGCAAAGAAGCCAGCTATACACTCAGCACAG
Seq A exon
TTCCTCTGCCTGCACCTGAGGCCCTCAAGATCTTAGAAGAAGAGGATCACGTGTTTCTCTTCTGGAAGAGTCTGGCTGTGAAGGATCGCACCTTTAATGAGAGCAGG
Seq C2 exon
GGCTATGAGGTGTATGTGCATGACAGTGTCACCAACTCCACCAAGTGTTTAGGCAACACAACAGAGACGTTCTTCAGAATCAACAGCCTGCTGGCAGGTCATAACTACACGTTCTCGGTGCGGGCGCGATGTCTACTCAGCAACCAGCTTTGTGGAGAGTCAGCGGTGCTGTTATATGATGAACTGGGCAAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.9=88.1)
A:
PF0004116=fn3=PU(41.0=88.9)
C2:
PF0004116=fn3=PD(56.4=65.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACACTGAAGGGCCTGGAG
R:
ACTCTCCACAAAGCTGGTTGC
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]