GgaEX0009400 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3488388-3489234:-
Coord C1 exon
chr24:3489060-3489234
Coord A exon
chr24:3488737-3488843
Coord C2 exon
chr24:3488388-3488580
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTCTCATGTGCAGTTC
3' ss Score
9.99
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTGTACGCTGTTGCAGTTAAGGATTTAGTAAGAAAAACAGATAAAATCTACAAAGTGAAAACGCGGAACAGCACGGTGGAGTACACCATTAAGAAACTCGAACCGGGAGGCAAATACCACGTGATTGTTCAACTGGGAAACATGAGCAAAGAATCCAGCATGATGATTAACACAG
Seq A exon
TTCCACTCTCTGCACCGGATGCCTTAAAAATTATAACAGAAAATGACCACATTCTGCTCTTTTGGAAGAGCTTGGCATTAAAGGAAAGCAATTTCAATGAGAGCCGG
Seq C2 exon
GGTTATGAGGTTCTCATGTTTGACAGCCTGGTGAACCGCACGGCCTATCTTGGGAACACCACTGAGAACTTCTTCAAAGTTTCCAACCTGAAGATAGGTCACAACTACTCCTTTGCAGTCCGGGCCAGGTGTCTGTATGGCGGGCAGATGTGTGGGGAGCCAGCCACGCTTCTCTACGATGAGCTGGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(61.4=86.4)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGCAAATACCACGTGAT
R:
CATCGTAGAGAAGCGTGGCTG
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]