Special

MmuEX6065168 @ mm10

Exon Skipping

Gene
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41973937-41977610:-
Coord C1 exon
chr9:41977436-41977610
Coord A exon
chr9:41976358-41976464
Coord C2 exon
chr9:41973937-41974129
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTTAATCTTGCACTCTCAGTTT
3' ss Score
5.22
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTCTACGCCATTGCAGTGAAAGATCTGATCAGGAAGACGGACAGAAGCTACAAAGTCAGATCCCGCAACAGTACTGTGGAGTACAGCCTAAGCAAGCTGGAACCTGGAGGGAAATACCACATCATTGTCCAGCTGGGAAACATGAGCAAGGATTCCAGCATAAAAATCACCACAG
Seq A exon
TTTCGTTATCAGCACCTGATGCCTTAAAAATCATAACGGAAAACGACCACGTTCTCCTCTTTTGGAAAAGCCTAGCACTGAAGGAAAAGCAGTTCAATGAAACCAGG
Seq C2 exon
GGCTATGAGATCCACATGTCTGACAGCGCTGTGAATCTCACCGCTTACCTCGGGAATACTACGGACAATTTCTTTAAAGTGTCCAACCTGAAGATGGGTCATAACTACACTTTCACGGTCCAAGCGCGGTGTCTCTTTGGTAGCCAGATCTGTGGGGAGCCCGCCGTGCTGCTGTACGATGAACTGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'89-88,'89-83,90-88
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0004116=fn3=PD(61.0=84.7)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCGCAACAGTACTGTGG
R:
CGCTTGGACCGTGAAAGTGTA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types