BtaEX6058886 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35485311-35486838:-
Coord C1 exon
chr15:35486633-35486838
Coord A exon
chr15:35485681-35485811
Coord C2 exon
chr15:35485311-35485417
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGTTCTGCCCTACAGGGA
3' ss Score
10.57
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GCTCCAGCTGCCTCACGTGATGGGGAACCTGCGTCTACAGCTGCTTGCTGGCTATGTCCTCGTGCGGCTTCAGTCGGCCTTCACGCTTGCCTGGGATGGCACCTCAGCTGTTTACATTAAAATGAGTCCAGAGTTCCTAGGCTGGACCCATGGGCTGTGTGGGAACAACAATGCCGACCCCCAGGATGACCTGGTGACCAGCTATG
Seq A exon
GGAAGCTGACGGATGATGTGGCGGAGTTCGTGCACAGCTGGCAGGAGCAGGCCCCCAACCAGCCTCCAGGTCCCACGACCTCCTCCCTGCCCCGCCCTCCATGCCTGCAGCAGACCCCGGGAACCATGCAG
Seq C2 exon
GGTGTGTATGACCGCTGTGAGGCACTGCTGCGACCCCCCTTTGACACCTGCCATGCCTACGTCAGCCCTCTGCCCTTCATGGCCAGCTGTACCAGCGATCTCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.523 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(45.7=100)
A:
PF0009420=VWD=PD(0.7=2.3),PF087426=C8=PU(1.3=2.3)
C2:
PF087426=C8=FE(46.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGGCTATGTCCTCGTG
R:
GTACAGCTGGCCATGAAGGG
Band lengths:
255-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]