GgaEX1041524 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11387280-11394845:+
Coord C1 exon
chr5:11387280-11387485
Coord A exon
chr5:11393805-11393935
Coord C2 exon
chr5:11394739-11394845
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGACTGTATGTCTTCTGTAGGAA
3' ss Score
10.06
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACTTCAGTTGCCTTCTGTTATTGGAAACTTACACATCCAGAAACTAGCTGGATACTTTCTAGTCAGGCACCAGTATGCCTTTACTCTGGCTTGGGATGGTGTATCTGCAGTGTATATCAAAATGGCACCGCAGTACCTGGGCAAAACGCATGGACTGTGTGGGAACAATAATGCTGTCCTGCAGGATGATCTTGAAACTAGTTATG
Seq A exon
GAAAATTGACAGATGATATAACAGAGTTTGTGGAGAGTTGGCAGGAAAATCCTCCACAAGGACAACCCACTTGGGATAACTCTTTTCTCAGTGAGCCACCTTGCCTGACTCAAAGCCACGAATCTTTACAG
Seq C2 exon
AGGACATACACTCTGTGTAATATTCTATTACATCCTCCATTTGAACAATGCCACGAATACGTGAGCCCTCTTCCTTTTATGGCAAGCTGCACCAGTGATCTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'4-7,'4-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(45.4=100)
A:
PF0009420=VWD=PD(0.7=2.3),PF087426=C8=PU(1.3=2.3)
C2:
PF087426=C8=FE(46.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGTCAGGCACCAGTATGC
R:
ACTGGTGCAGCTTGCCATAAA
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]