MmuEX6010906 @ mm9
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53505303-53506754:+
Coord C1 exon
chr7:53505303-53505508
Coord A exon
chr7:53506329-53506459
Coord C2 exon
chr7:53506648-53506754
Length
131 bp
Sequences
Splice sites
3' ss Seq
GATACCAGTTTTCCCTGCAGGGA
3' ss Score
7.02
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGTCCAGCTGCCGCAGGTGGTGGGGGGTGTGCAGCTGCAGCAGCTGGCTGGTTACGTCATCGCGAGGCATCCGTCAGCCTTCACCCTGGCCTGGGATGGTATCTCAGCCATTTACATCAAGATGAGCCCTGAGTTTCTGGGCTGGACCCATGGGCTGTGTGGGAACAACAATGCTGACCCTCAGGATGACCTGGTGACCAGTTACG
Seq A exon
GGAAGGTGACTGATGATGTAGGGGAGTTTGTACACAGCTGGCAGGAGCAGGTCCCCAACAGCCCTCCAGGACCTGTGACTACTTCCCTGCCTCGCCCACCATGCCTGCAGCAGAGCCCAGCATCCATGCAG
Seq C2 exon
GGTGTGTATGAGCGGTGTGAAGTACTGTTGAGGCCTCCTTTCGACACCTGCCATGCTTATGTCAGCCCTCTGCCCTTCGCAGCCAGCTGTACCAGTGACCTCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.386 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(45.7=100)
A:
PF0009420=VWD=PD(0.7=2.3),PF087426=C8=PU(1.3=2.3)
C2:
PF087426=C8=FE(46.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGTCAGCCTTCACCCTG
R:
TGGCAGAGGTCACTGGTACA
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: