MmuEX6010906 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46249933-46251384:+
Coord C1 exon
chr7:46249933-46250138
Coord A exon
chr7:46250959-46251089
Coord C2 exon
chr7:46251278-46251384
Length
131 bp
Sequences
Splice sites
3' ss Seq
GATACCAGTTTTCCCTGCAGGGA
3' ss Score
7.02
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGTCCAGCTGCCGCAGGTGGTGGGGGGTGTGCAGCTGCAGCAGCTGGCTGGTTACGTCATCGCGAGGCATCCGTCAGCCTTCACCCTGGCCTGGGATGGTATCTCAGCCATTTACATCAAGATGAGCCCTGAGTTTCTGGGCTGGACCCATGGGCTGTGTGGGAACAACAATGCTGACCCTCAGGATGACCTGGTGACCAGTTACG
Seq A exon
GGAAGGTGACTGATGATGTAGGGGAGTTTGTACACAGCTGGCAGGAGCAGGTCCCCAACAGCCCTCCAGGACCTGTGACTACTTCCCTGCCTCGCCCACCATGCCTGCAGCAGAGCCCAGCATCCATGCAG
Seq C2 exon
GGTGTGTATGAGCGGTGTGAAGTACTGTTGAGGCCTCCTTTCGACACCTGCCATGCTTATGTCAGCCCTCTGCCCTTCGCAGCCAGCTGTACCAGTGACCTCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'1-18,'1-7,8-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.386 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(45.7=100)
A:
PF0009420=VWD=PD(0.7=2.3),PF087426=C8=PU(1.3=2.3)
C2:
PF087426=C8=FE(46.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGTCAGCCTTCACCCTG
R:
TGGCAGAGGTCACTGGTACA
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types