BtaEX6058888 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35484269-35485417:-
Coord C1 exon
chr15:35485311-35485417
Coord A exon
chr15:35484802-35484911
Coord C2 exon
chr15:35484269-35484397
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCTCGGCTTCCCTGCACAGATC
3' ss Score
9.57
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
GGTGTGTATGACCGCTGTGAGGCACTGCTGCGACCCCCCTTTGACACCTGCCATGCCTACGTCAGCCCTCTGCCCTTCATGGCCAGCTGTACCAGCGATCTCTGCCA
Seq A exon
ATCAGCAGGCGATGAAGCCACATGGTGCCGGGCACTGGCAGAGTATGCCCGGGCATGTGCCCAGGCAGGTCGGCCGCTGCAGGGGTGGAGGAACCAGCTCCAGTCATGCA
Seq C2 exon
CGGTGCTCTGCAAGGAGAAGGCCTTTGTCTACAACGAGTGCGTCGCCTGCTGCCCGGCCTCCTGCCAGCCGCGGGCATCCTGTGTGGACAGCGAGATAGCCTGTGTGGACGGCTGCTACTGCCCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(46.7=100)
A:
PF087426=C8=FE(49.3=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(72.7=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTATGACCGCTGTGAGG
R:
CGTCAGGGCAGTAGCAGC
Band lengths:
235-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]