GgaEX1041541 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11394739-11396722:+
Coord C1 exon
chr5:11394739-11394845
Coord A exon
chr5:11395729-11395838
Coord C2 exon
chr5:11396597-11396722
Length
110 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTTGTTTGTTGTAAGGTC
3' ss Score
5.33
5' ss Seq
GTGGTATGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
AGGACATACACTCTGTGTAATATTCTATTACATCCTCCATTTGAACAATGCCACGAATACGTGAGCCCTCTTCCTTTTATGGCAAGCTGCACCAGTGATCTTTGCAT
Seq A exon
GTCAGCAGTTGATAATGCAACTTGGTGTCGAGCATTAACTGAATATGCCAGAGCATGTGCCCAAGCAGGAAAACCTCTTCATGGATGGAGGAGACACTTTCAGCCATGTG
Seq C2 exon
TGATTACCTGTCTCGAACCACTAACCTACAATGAGTGCATCAACTGTTGCCCTGTTTCATGTCATCAGCAATCACAGTGTATTGACAGTGAGCTTCCCTGCATTGACGGATGCTATTGTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208_MULTIEX3-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(46.7=100)
A:
PF087426=C8=FE(49.3=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(72.2=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCTCCATTTGAACAATGCC
R:
TCTGGACAATAGCATCCGTCA
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]