HsaEX6001098 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17580085-17581209:+
Coord C1 exon
chr11:17580085-17580191
Coord A exon
chr11:17580599-17580708
Coord C2 exon
chr11:17581081-17581209
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCCTTGGTTTCTCTGCACAGATC
3' ss Score
10.12
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
GGCGTGTACGAGCAGTGTGAGGCTCTACTGCGGCCCCCCTTTGACGCCTGCCACGCCTACGTCAGCCCTCTGCCCTTCACAGCCAGTTGTACCAGTGATCTCTGCCA
Seq A exon
ATCAATGGGTGATGTAGCCACCTGGTGCCGGGCACTGGCGGAGTATGCCCGGGCGTGTGCCCAGGCAGGGCGGCCCTTGCAAGGCTGGAGGACCCAGCTCCGGCAATGCA
Seq C2 exon
CTGTGCACTGCAAGGAGAAGGCCTTTACCTACAATGAGTGCATCGCCTGCTGCCCTGCCTCCTGCCATCCCCGGGCATCCTGTGTGGACAGTGAGATCGCCTGTGTGGACGGCTGCTATTGCCCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'11-16,'11-15,12-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(46.7=100)
A:
PF087426=C8=FE(49.3=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(72.7=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTACGAGCAGTGTGAGG
R:
CAATAGCAGCCGTCCACACAG
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)