HsaEX6001098 @ hg38
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17553365-17569288:+
Coord C1 exon
chr11:17553365-17553519
Coord A exon
chr11:17559052-17559161
Coord C2 exon
chr11:17569156-17569288
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCCTTGGTTTCTCTGCACAGATC
3' ss Score
10.12
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
TGTACAATGCCGGCCCTGAGAGGGACAGCATTTGCCGGGCGTGGGGGCAGCACCACGTGGAGACATTTGATGGGCTCTACTACTACCTCTCCGGAAAGGGCAGCTACACCCTGGTGGGTCGCCATGAGCCCGAGGGACAGAGCTTCTCCATCCAG
Seq A exon
ATCAATGGGTGATGTAGCCACCTGGTGCCGGGCACTGGCGGAGTATGCCCGGGCGTGTGCCCAGGCAGGGCGGCCCTTGCAAGGCTGGAGGACCCAGCTCCGGCAATGCA
Seq C2 exon
AACCAAGATGGAGCCTGTGTCCAGTCAGTGTCAGTGATTCTGCACCAGGACCCTCGGAGGCAGGTGACCCTGACCCAGGCAGGGGATGTCCTTCTGTTTGACCAGTACAAGATCATCCCGCCATACACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162_MULTIEX1-5/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(26.5=76.9)
A:
PF087426=C8=FE(49.3=100)
C2:
PF0009420=VWD=FE(28.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGGACAGCATTTGCC
R:
GGTCAAACAGAAGGACATCCCC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains