MmuEX6010904 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46251278-46252587:+
Coord C1 exon
chr7:46251278-46251384
Coord A exon
chr7:46251979-46252088
Coord C2 exon
chr7:46252459-46252587
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATGCAATATCCTTGTACAGATC
3' ss Score
6.89
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
GGTGTGTATGAGCGGTGTGAAGTACTGTTGAGGCCTCCTTTCGACACCTGCCATGCTTATGTCAGCCCTCTGCCCTTCGCAGCCAGCTGTACCAGTGACCTCTGCCA
Seq A exon
ATCAGGAGGCGATGAAGCCACTTGGTGCCGAGCACTGATGGAATATGCCCGGGCATGTGCACAGGCAGGGCGCCCTCTGCAGGGCTGGAGGACCCAACTCTCACAATGCA
Seq C2 exon
CTGTGCACTGCAAAGAGAAGGCCTTCATCTATAACGAGTGTATTGCTTGCTGTCCGGCTTCCTGCCAATCCCGTGCTTCATGTGTAGACAGTGAGATCACCTGTGTGGATGGCTGCTACTGCCCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'1-20,'1-9,10-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(46.7=100)
A:
PF087426=C8=FE(49.3=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(72.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGTATGAGCGGTGTGAA
R:
CATTGGGGCAGTAGCAGC
Band lengths:
236-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types