BtaEX6058893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35478714-35482501:-
Coord C1 exon
chr15:35482356-35482501
Coord A exon
chr15:35480028-35480160
Coord C2 exon
chr15:35478714-35478891
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGGCCTTCCTCTCTCACTAGAAC
3' ss Score
10.33
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
CTGAGTGTTCAGTGACTGGTGACATCCACTTCACGACCTTCGACGGCCGCCGCTACACATTCCCCGCCACGTGTCAGTACATCCTGGCCAAGAGCCGCTCCTCGGGCACATTCACAGTGATGCTGCAGAATGCCCCATGTGGCCTG
Seq A exon
AACCAGGACGGAGTCTGTGTCCAGTCAGTGTCAGTGATTCTGCATCAGGACCCTCGGAGGCAGGTGACCTTGACCCAAGCAGGGGATGTTCTTCTGTTTGACCAGTACAAGGTCACCCCACCCTACACAGACG
Seq C2 exon
ACGCCTTTGAGATCCGGAGGCTGTCCTCGGTGTTCCTGCGTGTGAGGACCAATGTGGGTGTGCGGGTGCTCTACGACCGCGAAGGACTGCGGCTCTACCTGCAGGTGGACCAGCGATGGGTGGAGGACACCGTGGGCCTCTGCGGCACCTTCAACGGCAACACGCAGGACGATTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(31.5=34.7),PF0009420=VWD=PU(29.5=93.9)
A:
PF0009420=VWD=FE(28.2=100)
C2:
PF0009420=VWD=FE(37.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGTCAGTACATCCTGGC
R:
GAAATCGTCCTGCGTGTTGC
Band lengths:
255-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]