HsaEX6001093 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17583209-17591937:+
Coord C1 exon
chr11:17583209-17583354
Coord A exon
chr11:17590703-17590835
Coord C2 exon
chr11:17591760-17591937
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTCTATCTCTCCAGAAC
3' ss Score
11.75
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
CTGAGTGCTCAGTGACTGGTGACATTCACTTCACAACCTTTGATGGCCGCCGGTACACGTTCCCCGCCACATGTCAGTACATCCTGGCCAAGAGCCGCTCTTCGGGCACCTTCACCGTGACATTGCAGAATGCCCCATGTGGCCTG
Seq A exon
AACCAAGATGGAGCCTGTGTCCAGTCAGTGTCAGTGATTCTGCACCAGGACCCTCGGAGGCAGGTGACCCTGACCCAGGCAGGGGATGTCCTTCTGTTTGACCAGTACAAGATCATCCCGCCATACACAGATG
Seq C2 exon
ATGCCTTTGAGATCCGTAGGCTGTCCTCCGTGTTCCTGCGGGTGAGGACGAACGTGGGCGTGCGGGTGCTCTACGACCGTGAAGGGCTCCGACTGTACCTGCAAGTGGACCAGCGATGGGTGGAGGATACCGTGGGCCTCTGCGGCACCTTCAATGGCAACACGCAGGATGACTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'16-21,'16-20,17-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(31.5=34.7),PF053758=Pacifastin_I=PD(9.4=6.1),PF0009420=VWD=PU(29.5=93.9)
A:
PF0009420=VWD=FE(28.2=100)
C2:
PF0009420=VWD=FE(37.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCTCAGTGACTGGTGA
R:
GTCCACTTGCAGGTACAGTCG
Band lengths:
255-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)