GgaEX6037110 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11399264-11407400:+
Coord C1 exon
chr5:11399264-11399409
Coord A exon
chr5:11406533-11406665
Coord C2 exon
chr5:11407223-11407400
Length
133 bp
Sequences
Splice sites
3' ss Seq
TAAACTGCTCTCTTTTGTAGAAC
3' ss Score
9.76
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
CTGAATGTTCAGTTTCAGGAGACATTCATTTTATGACATTTGATGGGCGCGAATACACTTTTCAAGCCACTTGCCAATATATTCTAGCAAAAAGCCGTACAACTGGAGAGTTTACTGTATCCTTGCAAAATGCTCCCTGTGGACAG
Seq A exon
AACCAGGATGGATCATGTATCCAATCAATCAGCATTATTCTTAAGCAGGACCCCAAGAGGCAAGTGACTCTGACTCATTCAGGAGATGTTTTGATATATGACCAGTACAAAATTAACCTGCCATATGCAGATG
Seq C2 exon
ATTTATTTGAAATACGAAAACTCTCCTCTGTATTTCTTCAAGTAAAGACACGCATTGGATTACAGATGCTATATGACAGAGAAGGACTGAGGCTTTATCTTCAAGCTGATGGACGGTGGAAGGACAATACTATCGGACTTTGTGGAACCTTCAATGGAAATATGGAGGATGATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(36.2=42.9),PF0009420=VWD=PU(29.5=93.9)
A:
PF0009420=VWD=FE(28.2=100)
C2:
PF0009420=VWD=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACATTTGATGGGCGCGA
R:
TTGTCCTTCCACCGTCCATCA
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]