HsaEX6001093 @ hg38
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17561662-17570390:+
Coord C1 exon
chr11:17561662-17561807
Coord A exon
chr11:17569156-17569288
Coord C2 exon
chr11:17570213-17570390
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTCTATCTCTCCAGAAC
3' ss Score
11.75
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
CTGAGTGCTCAGTGACTGGTGACATTCACTTCACAACCTTTGATGGCCGCCGGTACACGTTCCCCGCCACATGTCAGTACATCCTGGCCAAGAGCCGCTCTTCGGGCACCTTCACCGTGACATTGCAGAATGCCCCATGTGGCCTG
Seq A exon
AACCAAGATGGAGCCTGTGTCCAGTCAGTGTCAGTGATTCTGCACCAGGACCCTCGGAGGCAGGTGACCCTGACCCAGGCAGGGGATGTCCTTCTGTTTGACCAGTACAAGATCATCCCGCCATACACAGATG
Seq C2 exon
ATGCCTTTGAGATCCGTAGGCTGTCCTCCGTGTTCCTGCGGGTGAGGACGAACGTGGGCGTGCGGGTGCTCTACGACCGTGAAGGGCTCCGACTGTACCTGCAAGTGGACCAGCGATGGGTGGAGGATACCGTGGGCCTCTGCGGCACCTTCAATGGCAACACGCAGGATGACTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'17-21,'17-20,18-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(32.7=36.7),PF053758=Pacifastin_I=PD(12.1=8.2),PF0009420=VWD=PU(29.5=93.9)
A:
PF0009420=VWD=FE(28.2=100)
C2:
PF0009420=VWD=FE(37.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCTCAGTGACTGGTGA
R:
GTCCACTTGCAGGTACAGTCG
Band lengths:
255-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains