DreEX6063933 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6044799-6047072:+
Coord C1 exon
chr18:6044799-6044944
Coord A exon
chr18:6045013-6045145
Coord C2 exon
chr18:6046895-6047072
Length
133 bp
Sequences
Splice sites
3' ss Seq
GTGTTTAACCTGTCTCTCAGTCT
3' ss Score
6.87
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
CGGAATGCACAGTAGTGGGTGACACACATGTGACCACTTTTGATGGGCGAATCTACATGCACTTGGGCTCTTGTCAATATGTGCTGGTGAAAAGCCGGGGCAACACCAAGTTTACTGTGACACTACAGTATACCGCCTGTGGAGAG
Seq A exon
TCTCAGGAACACTCCTGCATCCACTCGGTGGCTCTGGTGGTGGATGAAGATGTCAGCAGGCAGGTCACCCTCACCAGAGATGGAGAAGTTGTGATTGGAGCCAGTATGGCTGTTAATTTACCCTACTCAGATG
Seq C2 exon
AGACAGTGAATGTTCGTCGACTGACCTCTCTGTTTGTGGGTCTGCGGTCGGTCTTTGGCCTGAGGTTTCAGTACGACTGGCAGGGTGGACGGATCTACCTTCAGTTGGACAGCACCTGGATGGGCTCCACACTCGGCCTCTGTGGGACCCTCAATGGAAACCTGCGGGATGATTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(29.5=93.9)
A:
PF0009420=VWD=FE(28.2=100)
C2:
PF0009420=VWD=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCACTTGGGCTCTTGTCA
R:
AGGTTTCCATTGAGGGTCCCA
Band lengths:
254-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]