BtaEX6019900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9830811-9835916:+
Coord C1 exon
chr5:9830811-9830956
Coord A exon
chr5:9832070-9832193
Coord C2 exon
chr5:9835739-9835916
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATAATTTGATTTTTATGCAGAAC
3' ss Score
5.94
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTCAGTGCTCCATTGTAGGTGATTCCCATTTTATGACTTTTGATGGTCGACATTATTCTTTCATTGGAATGTGCCAATACATCCTTGTCAAAGGAACTGGAAAAGATAAATTCACAATTACTTTACAGAAAGCTCACTGTGAACAG
Seq A exon
AACCTTGGCTTGGTCTGCCTTCAGTCTGTAACTCTGATTCTGGAGGATGATTTTAACAAACAAGTGACCCTCAGTAGGGGAGGGCAGATCCTCACGAGTCCCAACCAAGGCTTCAGTCTGAATG
Seq C2 exon
GAATTGTTGAAATTCAGACTCTGTCATCCTTATTTATTCTTCTAAAAACCACATTTGGTTTAAAGATTCTGTTCACTGTAGATGGGGAAAGAATTTATATTCAGCTAACTAGTGCGTGGAAAAGAAGAACATTAGGTCTCTGTGGCACATTTAACGGGAACATAAGGGATGATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(30.1=93.9)
A:
PF0009420=VWD=FE(26.8=100)
C2:
PF0009420=VWD=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATGTGCCAATACATCCTTGT
R:
TGTTCCCGTTAAATGTGCCACA
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]