HsaEX7007333 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80255040-80258002:+
Coord C1 exon
chr12:80255040-80255185
Coord A exon
chr12:80256337-80256460
Coord C2 exon
chr12:80257825-80258002
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATAATTTGATTTTTACGCAGAAT
3' ss Score
5.59
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTCAATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATTATTCTTTTATTGGCATGTGCCAATACATCCTCGTGAAAGGAACTGGAAAAGATAAATTCACGATTACTTTACAGAAAGCTCCCTGTGAGCAG
Seq A exon
AATCTTGGCTTGGTCTGCCTTCAGTCTATAACTCTGATTCTGGAGGATGATTTTAACAAACAAGTGACCCTTGGTAGGGGAGGACAAATTCTCACTAGTCCTAACCAAGGCTTCAACCTGAATG
Seq C2 exon
GTATTGTTGAAATTCAAACTCTGTCATCCTTATTTATACTTCTAAAAACCACATTTGGTTTAAAGATTCTGTTTGCTATAGATGGGGAAAGAATTTATATTCAGCTTACTAGCGCATGGAAAAGAAGAACATTAGGTCTGTGTGGCACTTTTAATGGCAACATAAGGGATGATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(32.7=36.7),PF0009420=VWD=PU(30.1=93.9)
A:
PF0009420=VWD=FE(26.8=100)
C2:
PF0009420=VWD=FE(38.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTGCCAATACATCCTCG
R:
TGTTGCCATTAAAAGTGCCACAC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains