MmuEX6051159 @ mm9
Exon Skipping
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107311421-107315198:-
Coord C1 exon
chr10:107315053-107315198
Coord A exon
chr10:107313854-107313977
Coord C2 exon
chr10:107311421-107311598
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATACTGTGACTTTTCTGCAGAAC
3' ss Score
8.13
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTCAGTGTTCTGTTGTGGGTGACTCTCATTTCACCACCTTTGATGGGCGTCATTACTCTTTTATTGGCTTGTGTCAGTACATCCTTGTGAAAGGAACTGGAAAAGATAGATTCACGATCACTTTGCAGAAGGCTCACTGTGAACAG
Seq A exon
AACCTGGGTTTGGTCTGCCTTCAGTCCATAACTCTAATACTGGAGGATGACTTTAACAAACAAGTGACGCTCAGCAGAGGAGGCCAGATTGTCACCAGTCCCAACCAAGGCTTCACCCTGAACG
Seq C2 exon
GCATTGTTGAAATTCAAACCCTGTCATCCTTATTCATTCTCCTAAGAACCACCTTTGGTTTAAAGATCTTGTTCGCTATTGATGGAGAAAGAATTTACATTCAGCTTTCCAGTGCCTGGAAAAGAAGGACATTAGGTCTGTGCGGCACCTTTAATGGCAACATTAGGGATGATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(30.1=93.9)
A:
PF0009420=VWD=FE(26.8=100)
C2:
PF0009420=VWD=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTTTGATGGGCGTCATT
R:
CCGCACAGACCTAATGTCCTT
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: