Special

MmuEX6051159 @ mm10

Exon Skipping

Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107874365-107878142:-
Coord C1 exon
chr10:107877997-107878142
Coord A exon
chr10:107876798-107876921
Coord C2 exon
chr10:107874365-107874542
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATACTGTGACTTTTCTGCAGAAC
3' ss Score
8.13
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTCAGTGTTCTGTTGTGGGTGACTCTCATTTCACCACCTTTGATGGGCGTCATTACTCTTTTATTGGCTTGTGTCAGTACATCCTTGTGAAAGGAACTGGAAAAGATAGATTCACGATCACTTTGCAGAAGGCTCACTGTGAACAG
Seq A exon
AACCTGGGTTTGGTCTGCCTTCAGTCCATAACTCTAATACTGGAGGATGACTTTAACAAACAAGTGACGCTCAGCAGAGGAGGCCAGATTGTCACCAGTCCCAACCAAGGCTTCACCCTGAACG
Seq C2 exon
GCATTGTTGAAATTCAAACCCTGTCATCCTTATTCATTCTCCTAAGAACCACCTTTGGTTTAAAGATCTTGTTCGCTATTGATGGAGAAAGAATTTACATTCAGCTTTCCAGTGCCTGGAAAAGAAGGACATTAGGTCTGTGCGGCACCTTTAATGGCAACATTAGGGATGATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0009420=VWD=PU(30.1=93.9)

							
A:
PF0009420=VWD=FE(26.8=100)

							
C2:
PF0009420=VWD=FE(38.6=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000129467





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr12:80256337-80256460 
HIGH PSI
HsaEX7007333
(OTOGL)
Human
(hg19)
chr11:17590711-17590835 
HsaEX6001093
(OTOG)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:9832070-9832193 
BtaEX6019900
(OTOGL)
Chicken
(galGal4)
chr1:39714058-39714140 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr18:6045013-6045145 
HIGH PSI
DreEX6063933
(otogl)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCACCTTTGATGGGCGTCATT

				
R: 
CCGCACAGACCTAATGTCCTT

				
Band lengths: 
258-382

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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