BtaEX6058992 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35890466-35900227:+
Coord C1 exon
chr15:35890466-35890529
Coord A exon
chr15:35898402-35898545
Coord C2 exon
chr15:35900179-35900227
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATTACTTTTTATTTTTAAAGAAT
3' ss Score
5.97
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ACATCCTGTTGAAGAACTTTTAGATTTGTATCACAATCAAGTGGAGTTGGCTCTTCAAATTGAA
Seq A exon
AATCAGCACAGAGCAGTAGATCAAGTAATTAAAGCTGTAAGAAAAATCTGTGGTGCTTTAGATGGCGTGGAGACTCTTGCCATTACAGAATCGGTAAAGAAGCTGAAGAGAGCAGTAAATCTTCCAAGGAGTAGAAGTGCTGAA
Seq C2 exon
GCAACTTCACTGTCTGGAGGAGGAGACATTAACAGGAGTTCAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-'10-18,'10-15,13-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCTGTTGAAGAACTTTTAGATT
R:
TGAACTCCTGTTAATGTCTCCTCCT
Band lengths:
106-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]