RnoEX0065925 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185267769-185291423:+
Coord C1 exon
chr1:185267769-185267832
Coord A exon
chr1:185289449-185289592
Coord C2 exon
chr1:185291378-185291423
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTTCATTTTAAAGAAC
3' ss Score
7.67
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACACCCTGTTGAAGAACTCTTAGATTCCTATCACTACCAAGTAGAACTGGCTCTACAAACTGAA
Seq A exon
AACCAGCACCGAGCTATTGATCAAGTGATTAAAGCAGTAAGAAAAATCTGTAGTGCTTTAGATGGGGTTGAGACCCCCGCCGTCACAGAAGCAGTGAAGAAGCTAAAGCGAGCAGTTAACCTTCCAAGGAACAAAAGTGCTGAT
Seq C2 exon
GTGACTTCATTATCTGGAGGAGATACTAGCAAGAACTCAACTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-'17-21,'17-19,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGTTGAAGAACTCTT
R:
CCCTAGTTGAGTTCTTGCTAGT
Band lengths:
110-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]