MmuEX0035118 @ mm9
Exon Skipping
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:123520028-123531421:-
Coord C1 exon
chr7:123531358-123531421
Coord A exon
chr7:123522134-123522277
Coord C2 exon
chr7:123520028-123520073
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTCATTTTTTAAAGAAC
3' ss Score
7.06
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACACCCTGTTGAAGAGCTCTTAGATTCCTATCACTACCAAGTAGAACTGGCTCTTCAAACTGAA
Seq A exon
AACCAGCACCGAGCTGTTGATCAAGTGATTAAAGCAGTAAGAAAAATTTGTAGTGCTTTAGATGGGGTGGAGACCCCCTCCGTTACAGAAGCAGTGAAGAAGTTAAAGCGAGCAGTTAACCTTCCAAGGAATAAAAGTGCTGAT
Seq C2 exon
GTGACTTCATTATCTGGAAGTGACACAAGGAAGAACTCAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660-'14-18,'14-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGTTGAAGAGCTCTT
R:
AGTTGAGTTCTTCCTTGTGTCACT
Band lengths:
106-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: