HsaEX0047516 @ hg19
Exon Skipping
Gene
ENSG00000011405 | PIK3C2A
Description
phosphoinositide-3-kinase, class 2, alpha polypeptide [Source:HGNC Symbol;Acc:8971]
Coordinates
chr11:17156658-17167278:-
Coord C1 exon
chr11:17167215-17167278
Coord A exon
chr11:17158029-17158172
Coord C2 exon
chr11:17156658-17156706
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTATTTTTAAAGAAC
3' ss Score
6.35
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACACCCTGTTGAAGAACTCTTAGATTCTTATCACAACCAAGTAGAACTGGCTCTTCAAATTGAA
Seq A exon
AACCAACACCGAGCAGTAGATCAAGTAATTAAAGCTGTAAGAAAAATCTGTAGTGCTTTAGATGGTGTCGAGACTCTTGCCATTACAGAATCAGTAAAGAAGCTAAAGAGAGCAGTTAATCTTCCAAGGAGTAAAACTGCTGAT
Seq C2 exon
GTGACTTCTTTGTTTGGAGGAGAAGACACTAGCAGGAGTTCAACTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGTTGAAGAACTCTT
R:
CCCTAGTTGAACTCCTGCTAGTG
Band lengths:
113-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)