HsaEX0047516 @ hg38
Exon Skipping
Gene
ENSG00000011405 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr11:17135111-17145731:-
Coord C1 exon
chr11:17145668-17145731
Coord A exon
chr11:17136482-17136625
Coord C2 exon
chr11:17135111-17135159
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTATTTTTAAAGAAC
3' ss Score
6.35
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACACCCTGTTGAAGAACTCTTAGATTCTTATCACAACCAAGTAGAACTGGCTCTTCAAATTGAA
Seq A exon
AACCAACACCGAGCAGTAGATCAAGTAATTAAAGCTGTAAGAAAAATCTGTAGTGCTTTAGATGGTGTCGAGACTCTTGCCATTACAGAATCAGTAAAGAAGCTAAAGAGAGCAGTTAATCTTCCAAGGAGTAAAACTGCTGAT
Seq C2 exon
GTGACTTCTTTGTTTGGAGGAGAAGACACTAGCAGGAGTTCAACTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405_MULTIEX6-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.835
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGTTGAAGAACTCTT
R:
CCCTAGTTGAACTCCTGCTAGTG
Band lengths:
113-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development