HsaEX6000987 @ hg38
Exon Skipping
Gene
ENSG00000011405 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr11:17136482-17150655:-
Coord C1 exon
chr11:17150498-17150655
Coord A exon
chr11:17145668-17145731
Coord C2 exon
chr11:17136482-17136625
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATAACTGTTGTTTCTTTCAGACA
3' ss Score
9.66
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATTGAAGACCAAATTTCCATATACCAATCACCGCACAAACCCAGGCTATTTGTTAAGTCCAGTCACAGCACAAAGAAACATATGCGGAGAAAATGCTAGTGTGAAGGTCTCCATTGACATTGAAGGATTTCAGCTACCAGTTACTTTTACGTGTGATG
Seq A exon
ACACCCTGTTGAAGAACTCTTAGATTCTTATCACAACCAAGTAGAACTGGCTCTTCAAATTGAA
Seq C2 exon
AACCAACACCGAGCAGTAGATCAAGTAATTAAAGCTGTAAGAAAAATCTGTAGTGCTTTAGATGGTGTCGAGACTCTTGCCATTACAGAATCAGTAAAGAAGCTAAAGAGAGCAGTTAATCTTCCAAGGAGTAAAACTGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405_MULTIEX6-4/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.7=63.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACAAACCCAGGCTATTTG
R:
ATCTACTGCTCGGTGTTGGTT
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains