GgaEX0008678 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12867844-12870748:-
Coord C1 exon
chr5:12870669-12870748
Coord A exon
chr5:12870503-12870566
Coord C2 exon
chr5:12867844-12867987
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATAATTACTGTATCTTGCAGATC
3' ss Score
9.56
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAAGAAGATGACAGTACACCCATAGACCTAACCAAACACCTCTACAAAGTAGAAAAGCCTTTCAGAGAACCTAACATAAG
Seq A exon
ATCTTCTATTGAAGAGCTTCTTGATATCTATCATAAGCAAATTGAAATAGCTCTGAAAAATGAG
Seq C2 exon
AACCAACATAAAGCAGTGGATCACTTGATTAAGACTGTCAGAAAAATCTGTTCAACATTGGATGGTGTAGAAACTCCTGCAATAACAGAATCTGTAAAGAAGCTGCGGAGGGCTGTTAATCTTCCAAGGATTAAAGACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGCCTTTCAGAGAACCT
R:
CCCTCCGCAGCTTCTTTACAG
Band lengths:
142-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]