DreEX0055522 @ danRer10
Exon Skipping
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27052837-27055893:+
Coord C1 exon
chr18:27052837-27052916
Coord A exon
chr18:27053026-27053089
Coord C2 exon
chr18:27055747-27055893
Length
64 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTCTTTCTTTTACAGAGA
3' ss Score
10.5
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
GCAGAAGATGACATCTCGCCCATTGATTTGGAGAAATACCTTGGTCTAGTGGAGAGGCCATTTAAAGAGGCAGTCACAAG
Seq A exon
AGAAGGCCTTGCTGAATATCTAGAAGGCTTTCATAAGCAAGTCAATCTCTGCCTTCAGAATGAG
Seq C2 exon
AACAACCAATATAAAACAGTGGACAATGTGGTTCAGTCTGTTAAGAATCTGTGCTGTGCTCTGGATGAAGTTGAGACACCAGCCATCACTGATGCCGTCAAGAGGCTCAAGCGCTCTGTCAACCTTCCTAGAACACGCTCACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGTCTAGTGGAGAGGC
R:
TCAGTGATGGCTGGTGTCTCA
Band lengths:
135-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]