BtaEX6058993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35890254-35898545:+
Coord C1 exon
chr15:35890254-35890333
Coord A exon
chr15:35890466-35890529
Coord C2 exon
chr15:35898402-35898545
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATAACTGTTCTTCATTTTAGACA
3' ss Score
8.83
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCGGAAGATGATGAAACACCTGTGGATTTAAACAAACACCTGCATCAAATAGAAAAACCTTATAAAGAAGTCATGACGAG
Seq A exon
ACATCCTGTTGAAGAACTTTTAGATTTGTATCACAATCAAGTGGAGTTGGCTCTTCAAATTGAA
Seq C2 exon
AATCAGCACAGAGCAGTAGATCAAGTAATTAAAGCTGTAAGAAAAATCTGTGGTGCTTTAGATGGCGTGGAGACTCTTGCCATTACAGAATCGGTAAAGAAGCTGAAGAGAGCAGTAAATCTTCCAAGGAGTAGAAGTGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-'9-15,'9-13,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGATGATGAAACACCTG
R:
ACGCCATCTAAAGCACCACAG
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]