MmuEX0035121 @ mm10
Exon Skipping
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:116378620-116388121:-
Coord C1 exon
chr7:116388042-116388121
Coord A exon
chr7:116387844-116387907
Coord C2 exon
chr7:116378620-116378763
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATACCTGTTTTTTCTTTCAGACA
3' ss Score
10.64
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCAGAAGATGATGAAGCACCTGTGGATTTAAACAAATACTTGTATCAAATAGAAAAACCTTATAAAGAAGTCATGACAAG
Seq A exon
ACACCCTGTTGAAGAGCTCTTAGATTCCTATCACTACCAAGTAGAACTGGCTCTTCAAACTGAA
Seq C2 exon
AACCAGCACCGAGCTGTTGATCAAGTGATTAAAGCAGTAAGAAAAATTTGTAGTGCTTTAGATGGGGTGGAGACCCCCTCCGTTACAGAAGCAGTGAAGAAGTTAAAGCGAGCAGTTAACCTTCCAAGGAATAAAAGTGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660-'21-27,'21-24,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATGAAGCACCTGTGGA
R:
TCTCCACCCCATCTAAAGCACT
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types