BtaEX6058994 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35888995-35890529:+
Coord C1 exon
chr15:35888995-35889106
Coord A exon
chr15:35890254-35890333
Coord C2 exon
chr15:35890466-35890529
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTTGTATGTGTTTATTTAGGCG
3' ss Score
7.43
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
TAATCATTGTCTTGGAAGCCATGAACATATTCAAAACTGTCGAAAATGGGACACAGAGATTAAACTGCAACTTTTGACCTTCAGCGCAATGTGTCAAAATCTGGCCCGAACA
Seq A exon
GCGGAAGATGATGAAACACCTGTGGATTTAAACAAACACCTGCATCAAATAGAAAAACCTTATAAAGAAGTCATGACGAG
Seq C2 exon
ACATCCTGTTGAAGAACTTTTAGATTTGTATCACAATCAAGTGGAGTTGGCTCTTCAAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.370 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.9=76.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGTCTTGGAAGCCATGAACA
R:
TTGAAGAGCCAACTCCACTTGA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]