MmuEX0035120 @ mm9
Exon Skipping
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:123531358-123534069:-
Coord C1 exon
chr7:123533958-123534069
Coord A exon
chr7:123531556-123531635
Coord C2 exon
chr7:123531358-123531421
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTATATGTATTTATTTAGGCA
3' ss Score
6.89
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
TAATCATTGCCTTGGAAGTCACGAACATATTCAAAATTGTCGAAAATGGGACACAGAGATTAAATTACAGCTCTTGACCTTGAGTGCAATGTGCCAGAATCTGGCTCGAACA
Seq A exon
GCAGAAGATGATGAAGCACCTGTGGATTTAAACAAATACTTGTATCAAATAGAAAAACCTTATAAAGAAGTCATGACAAG
Seq C2 exon
ACACCCTGTTGAAGAGCTCTTAGATTCCTATCACTACCAAGTAGAACTGGCTCTTCAAACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.9=76.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTGGAAGTCACGAACA
R:
TCAGTTTGAAGAGCCAGTTCT
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: