RnoEX0065940 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185264861-185289592:+
Coord C1 exon
chr1:185264861-185264972
Coord A exon
chr1:185267562-185267641
Coord C2 exon
chr1:185289449-185289592
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGTATGAATTTATTTAGGCA
3' ss Score
4.94
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
TAATCATTGCCTTGGAAGTCACGAACATATTCAAAATTGTCGAAAATGGGACACAGAGATTAAATTACAACTCTTGACCTTCAGTGCAATGTGCCAGAATCTGGCTCGAACA
Seq A exon
GCAGAAGATGATGAAGCACCTGTGGATTTAAACAAGTACTTGTATCAAATAGAAAAACCTTATAAAGAAGTCATGACAAG
Seq C2 exon
AACCAGCACCGAGCTATTGATCAAGTGATTAAAGCAGTAAGAAAAATCTGTAGTGCTTTAGATGGGGTTGAGACCCCCGCCGTCACAGAAGCAGTGAAGAAGCTAAAGCGAGCAGTTAACCTTCCAAGGAACAAAAGTGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479_MULTIEX1-5/6=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.9=76.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCAGTGCAATGTGCCA
R:
TCCTTGGAAGGTTAACTGCTCG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]