GgaEX6037045 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12870503-12871388:-
Coord C1 exon
chr5:12871277-12871388
Coord A exon
chr5:12870669-12870748
Coord C2 exon
chr5:12870503-12870566
Length
80 bp
Sequences
Splice sites
3' ss Seq
TATATAATATTTTACTACAGGAA
3' ss Score
7.52
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TAAGCACTGCGTAGGAAGCCATGAATATATTCAGAACTGTCGGAAATGGGATACAGAAATTAAACTGCAGCTTGTGACCCATACTGAAATTTGCCGAGGTCTGGCGCGAACA
Seq A exon
GAAGAAGATGACAGTACACCCATAGACCTAACCAAACACCTCTACAAAGTAGAAAAGCCTTTCAGAGAACCTAACATAAG
Seq C2 exon
ATCTTCTATTGAAGAGCTTCTTGATATCTATCATAAGCAAATTGAAATAGCTCTGAAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.9=76.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCGTAGGAAGCCATGAA
R:
TTTTTCAGAGCTATTTCAATTTGCTT
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]