BtaEX6058996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35886121-35889106:+
Coord C1 exon
chr15:35886121-35886278
Coord A exon
chr15:35888256-35888376
Coord C2 exon
chr15:35888995-35889106
Length
121 bp
Sequences
Splice sites
3' ss Seq
AATGACTAACTCTTTTACAGTGA
3' ss Score
6
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATTGAAGACCAACTTTCCATATACCAATCACTGTACAAATCGGGGCTATTTGTTAAGTCCAGTCACAGTACAAAGAAACATATGTGGAGAAAATGCTAGCGTGAAGGTCTCCATTGAAATTGAAGGATTTCAGCTACCAGTTACCTTCACATGTGATG
Seq A exon
TGAGTTCTACTGTAGAAATCATTATAATGCAAGCCCTTTGTTGGGTACATGATGACTTGAATCAAGTAGATGTTGGCAGCTATGTTCTGAAAGTTTGTGGTCAAGAGGAAGTGCTACAGAA
Seq C2 exon
TAATCATTGTCTTGGAAGCCATGAACATATTCAAAACTGTCGAAAATGGGACACAGAGATTAAACTGCAACTTTTGACCTTCAGCGCAATGTGTCAAAATCTGGCCCGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-'6-11,'6-10,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.7=63.0)
A:
PF0079413=PI3K_rbd=FE(38.5=100)
C2:
PF0079413=PI3K_rbd=PD(27.9=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGTACAAATCGGGGCT
R:
TTCGGGCCAGATTTTGACACA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]