GgaEX6037044 @ galGal4
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11165604-11169562:-
Coord C1 exon
chr5:11169405-11169562
Coord A exon
chr5:11166340-11166460
Coord C2 exon
chr5:11165604-11165715
Length
121 bp
Sequences
Splice sites
3' ss Seq
GATGTCATTTCTTTAAACAGTGA
3' ss Score
7.17
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
ATTGAGGACCAAGTTTCCTTACACTGATCAGCAATCAAACCCAGGCTTTGTGCTGAGTCCAATCATGCTACAAAGAAATATAACTGGGGAGAGTGCCAGTATCAAGGTTTCTATAGAAATCAAGGGATTCCAGCAGCCAGTAACTTTTACATGTGATG
Seq A exon
TGAGCTCTCCCGTTGAGCTTATAATAATGCAGGCGCTTTGCTGGGTGCATGATGACTTGAATGAAGTGGATATTGGCAGCTATTTCCTGAAAGTCTGTGGCCAAGAAGAAGTTCTACAGAA
Seq C2 exon
TAAGCACTGCGTAGGAAGCCATGAATATATTCAGAACTGTCGGAAATGGGATACAGAAATTAAACTGCAGCTTGTGACCCATACTGAAATTTGCCGAGGTCTGGCGCGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'26-13,'26-12,27-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.7=63.0)
A:
PF0079413=PI3K_rbd=FE(38.5=100)
C2:
PF0079413=PI3K_rbd=PD(27.9=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGATCAGCAATCAAACCCA
R:
GCCAGACCTCGGCAAATTTCA
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]