RnoEX0065938 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185261106-185267641:+
Coord C1 exon
chr1:185261106-185261263
Coord A exon
chr1:185263914-185264034
Coord C2 exon
chr1:185267562-185267641
Length
121 bp
Sequences
Splice sites
3' ss Seq
GACAAGTAACTCTTTTTCAGTGA
3' ss Score
3.78
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATTAAAGACCAAATTTCCATATACCGATCACTGTACAAATCCAGGCTATTTGTTAAGTCCAGTCACAGTGCAAAGAAACATGTGTGGGGAAAATGCCAGTGTGAAGGTCTCCATTGAAATTGAAGGGTTTCAACAACCAGTTACTTTTACATGTGATG
Seq A exon
TGAGTTCTACTGTAGACATAATTATAATGCAAGCCCTTTGCTGGGTACATGATGACTTGAATCAAGTGGATGTTGGCAGCTACATTCTGAAAGTTTGTGGTCAAGAGGAGGTTCTACAGAA
Seq C2 exon
GCAGAAGATGATGAAGCACCTGTGGATTTAAACAAGTACTTGTATCAAATAGAAAAACCTTATAAAGAAGTCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479_MULTIEX1-3/6=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.7=63.0)
A:
PF0079413=PI3K_rbd=FE(38.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCAAATTTCCATATACCGATCA
R:
AGTACTTGTTTAAATCCACAGGTGCT
Band lengths:
194-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]