DreEX0055519 @ danRer10
Exon Skipping
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27043998-27052717:+
Coord C1 exon
chr18:27043998-27044158
Coord A exon
chr18:27050365-27050485
Coord C2 exon
chr18:27052606-27052717
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCTGTATTTCTTTCCCTAGTGA
3' ss Score
8.9
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ACTGAGGTCAAAGTTCCCACACGATGACCTGTCTACCAACCCTGGCTATGTTCTCAGCCCTGTGATCACGCAGAGGGATGCAGGAGGGGACAATGGGGGCAGTGTGAAAGTGTCCATTGAGATTTCTGATTCTCAACAGCCTGTAACGTTTACTTGCGATG
Seq A exon
TGACTTCTCCAGTGGACTTGCTCATAATGCAGGCTTTGTGTTGGGTTCATGATGACCTGAACCAGGTGGACATCAATAGCTACGTTCTCAAGGTCTGCGGACAGGAGGAGGTCCTTCAGAA
Seq C2 exon
TAAACACAGTCTAGGCAGTCATGAGTACGTGCAGAACTGCAGGAAGTGGGAATCAGAGATCAAACTACAGCTCCTGTTTCTTAGCACAATGAGAAGAGATCTGGCCCGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(25.5=43.6)
A:
PF0079413=PI3K_rbd=FE(42.6=100)
C2:
PF0079413=PI3K_rbd=PD(30.9=76.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCACACGATGACCTGTCT
R:
TTCGGGCCAGATCTCTTCTCA
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]