BtaEX6059255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43447753-43469921:+
Coord C1 exon
chr15:43447753-43447854
Coord A exon
chr15:43448556-43448741
Coord C2 exon
chr15:43469795-43469921
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCAACCTGCTTGTGCCCTAGGTG
3' ss Score
9.67
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTCATAGGATACTGCAGCTGGCTGTGGTTGTTTCAGAAGTACTTGAGAATGGTTCCTCAGTTTTGGTGTGTTTGGAAGAAGGCTGGGACATCACTGCACAA
Seq A exon
GTGACCTCCCTGGTTCAGTTACTCAGTGATCCCTTTTATAGGACGCTTGAAGGCTTCCGGATGCTGGTCGAAAAAGAGTGGCTCTCTTTTGGTCATAAATTCAGTCAGCGGAGCAGCTTGACCCTCAGCTGTCAGGGCAGTGGTTTCACTCCGGTCTTCCTACAGTTCTTAGATTGTGTACACCAG
Seq C2 exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACTTAAAGTTCTTGGCTTTCCACTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGATTAGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981-'49-70,'49-67,50-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.6=100)
A:
PF066029=Myotub-related=FE(14.1=100)
C2:
PF066029=Myotub-related=PD(9.5=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACTGCAGCTGGCTG
R:
CGTGCTCTAATCTTTCATAGTCTGA
Band lengths:
222-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]