MmuEX6013146 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117464187-117474225:-
Coord C1 exon
chr7:117474124-117474225
Coord A exon
chr7:117473275-117473460
Coord C2 exon
chr7:117464187-117464313
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCGTCTGCTCTTACCCTAGGTG
3' ss Score
10.77
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTCACAGGATAATGCAGCTGGCTGTGGTTGTGTCAGAAGTACTTGAGAATGGGTCTTCAGTGTGGGTGTGTTTAGAAGAAGGCTGGGACATCACTACACAA
Seq A exon
GTGACATCCCTGGCACAGCTACTCAGTGACCCCTTCTACAGGACAATCGCAGGCTTCCGGACGCTGGTGGAGAAGGAATGGCTCTCTTTTGGTCATAAGTTCAGCCAGCGCAGCAGCTTGGCCCTTAACTCTCAGGGCGGTGGCTTTGCTCCCATCTTCTTGCAGTTCTTAGACTGTGTGCACCAG
Seq C2 exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACCTAAAGTTCTTGGCTTTCCATTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGACTAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'49-53,'49-51,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.0=100)
A:
PF066029=Myotub-related=FE(13.3=100)
C2:
PF066029=Myotub-related=PD(9.0=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACAGGATAATGCAGCTGG
R:
GTTCTAGTCTTTCATAGTCTGAATCC
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: