GgaEX0008040 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8637018-8645806:+
Coord C1 exon
chr5:8637018-8637119
Coord A exon
chr5:8638343-8638528
Coord C2 exon
chr5:8645680-8645806
Length
186 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTTTTGTGATCTAGGTA
3' ss Score
10.56
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTCACAGGATAATGCAGTTGGGTGTGATCATCTCTGAGCTCCTAGAGAATGGTTCTTCTGTTATGGTCTGCTTGGAAGATGGCTGGGATATTACTGCACAA
Seq A exon
GTAGTATCTCTGGTACAGTTACTCAGCGATCCCTTCTATAGAACACTTGAAGGCTTCCGAATGCTGGTGGAAAAAGAATGGCTCTCTTTTGGTCATAAATTCAGTCAGCGAAGTAATTTGACTCTAAATTGTCAGGGTAGTGGATTTGCACCTATTTTCTTACAGTTCTTAGACTGTGTGCATCAG
Seq C2 exon
ATTCATAACCAATATCCCACAGAGTTTGAGTTCAATCAGTATTACCTGAAGTTCCTAGCTTTTCATCACATATCAAATCGATTTAAAACATTTCTTCTGGATTCAGACTATGAAAGACTAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.1=100)
A:
PF066029=Myotub-related=FE(13.2=100)
C2:
PF066029=Myotub-related=PD(8.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACAGGATAATGCAGTTGGGT
R:
GTTCTAGTCTTTCATAGTCTGAATCC
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]