DreEX6008305 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66918038-66928519:+
Coord C1 exon
chr7:66918038-66918139
Coord A exon
chr7:66922292-66922477
Coord C2 exon
chr7:66928393-66928519
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCATTGTTTCTGTAGGTG
3' ss Score
10.57
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ATACACAAGCTGCTGCAGCTGGCTGTGGTGGCAGTGGAGTTGCTGGACAGCGGATCATCTGTACTAGTTAGTCTTGAAGAGGGCTGGGACATCACCACTCAG
Seq A exon
GTGGTTTCCCTCACACAGGTGCTCAGTGATCCTTTCTACAGGACTCTAGAGGGCTTTCAGGTGCTGTTGGAGAAAGAGTGGCTCTCTTTCGGCCACAAATTCAGCCAGCGTGGCAACCTGAACCCCAACAGCCAGGGCAGCGGCTTCACTCCCATCTTCCTCCAATTTCTTGACTGTGTGCACCAG
Seq C2 exon
GTTCATAACCAGTACCCCCTTGAGTTCGAGTTTAATCAATACTATCTGAAGTTTCTGGCATATCACTACGTCTCCAATCGCTTCAAGAACTTCCTTCTGGACTCAGATTACGAGCGCCTGGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(6.8=100)
A:
PF066029=Myotub-related=FE(12.6=100)
C2:
PF066029=Myotub-related=PD(8.5=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGCTGGCTGTG
R:
TGCTCCAGGCGCTCGTAATC
Band lengths:
218-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]