RnoEX6004313 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174961496-174971441:-
Coord C1 exon
chr1:174971340-174971441
Coord A exon
chr1:174970502-174970687
Coord C2 exon
chr1:174961496-174961622
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCATCTGCTCTTACCCTAGGTG
3' ss Score
10.32
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTCACAGGATAATGCAGCTGGCTGTGGTTGTGTCAGAAGTACTTGAGAACGGGTCTTCAGTTTGGGTGTGTTTAGAAGAAGGCTGGGATATCACTACACAA
Seq A exon
GTGACATCCCTAGTCCAGCTACTCAGTGATCCCTTCTACAGGACAATAGAAGGCTTCCGGATGTTGGTTGAAAAAGAATGGCTCTCTTTTGGTCATAAGTTCAGCCAGCGCAGCAGCCTGGCCCTTAACTCTCAGGGCAGTGGTTTTGCTCCCATCTTCTTGCAGTTCTTAGACTGCGTGCACCAG
Seq C2 exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACCTAAAGTTCTTGGCTTTCCATTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGACTAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812-'61-69,'61-68,62-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.2=100)
A:
PF066029=Myotub-related=FE(13.3=100)
C2:
PF066029=Myotub-related=PD(9.0=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGATAATGCAGCTGGCT
R:
CATGCTCTAGTCTTTCATAGTCTGA
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]