BtaEX6059344 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44114216-44119799:+
Coord C1 exon
chr15:44114216-44114305
Coord A exon
chr15:44118638-44118754
Coord C2 exon
chr15:44119677-44119799
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTACCTCCTTGGCAGAAA
3' ss Score
8.81
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
AGCGAGAGGACATTGCCCTGGAGGTGATGGAGAGCAACACCACGTCCGTGGCAGATGGGGATAAACGGGTGAAACGGCGGCTGCTCATGG
Seq A exon
AAACGTGTGCTGTCAACAATGGAGGCTGTGACCGCACCTGCAAGGATACTTCAACAGGGGTTCATTGCAGTTGTCCCGTCGGCTTCACGCTCCAGATGGATGGAAAGACCTGTAAAG
Seq C2 exon
ATATTGATGAGTGCCAGACGCGCAACGGAGGGTGTGATCATTTCTGCAGAAACACCGTGGGCAGTTTTGACTGCAGCTGCAAAAAGGGATTTAAATTATTAACAGATGAGAAGTCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573-'15-9,'15-7,16-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGACATTGCCCTGGAGG
R:
CTTGGCAAGACTTCTCATCTGT
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]