GgaEX0008327 @ galGal4
Exon Skipping
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8938653-8940882:+
Coord C1 exon
chr5:8938653-8938742
Coord A exon
chr5:8939673-8939789
Coord C2 exon
chr5:8940760-8940882
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTGTGTTGGCTAGAAA
3' ss Score
4.88
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGAGGGAAGAGGCTGCTGTTGAAATTCCAGAGGGCAACACTACAGCAGGAGCTGATGTGGACAAGCGGGTTAAGCGACGGTTACTCATGG
Seq A exon
AAACATGTGCAGTTAATAATGGTGGCTGCGATCGTACGTGTAAAGATACATCGACCGGAGTTCACTGCAGCTGTCCTGTTGGATTCACACTCCAGTTTGATGGGAAGACATGCAAAG
Seq C2 exon
ACATTGATGAGTGCCAATCCAATAATGGAGGCTGTGATCATTTCTGTAAAAACACTGTTGGCAGTTTTGATTGCAGCTGCAGAAAAGGGTTTAAATTATTAACAGATGAGAAGTCTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892-'8-9,'8-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGAGGCTGCTGTTGAAA
R:
CTTGACAAGACTTCTCATCTGTTAA
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]